Many have noticed that as of Joomla 3, your elements with jQuery tooltips will disappear after you mouseover them. This is caused by a conflict with Mootools. If you check the pages where you are seeing this issue, it's when Joomla's Mootools is loaded. The fix is simple:

jQuery(document).ready(function($) {
    $('.hasTooltip').each(function(){ = null; this.hide = null;});

This will disable the hide behavior for Mootools' tooltips, which is declared the same way as jQuery's. You can replace $('.hasTooltip') with whatever class you are using for your tooltips.

Hope this helps!

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